RefTrace
Lint Nextflow pipelines in Python.
$ pip install reftrace
Quick Start Guide
1. Install RefTrace
pip install reftrace
2. Get a Nextflow pipeline
You probably already have one.
RefTrace works completely offline and collects no data.
If you want to test out RefTrace, you can use the nf-core/rnaseq pipeline:
git clone https://github.com/nf-core/rnaseq.git
3. Generate a rules.py file
RefTrace rules are written in Python. Generate a starter rules.py file with:
reftrace generate
4. Run RefTrace
reftrace lint # inside the root of your pipeline directory